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Why is the SYNC frequency changing during a scan on a laser scanning FLIM system?

Most laser scanning systems such as B&H DCS-120, Zeiss LSM series (710, 780, 880, 980), Leica (SP5, SP8), Nikon (A1, C1, C2) use laser beam blanking. Beam blanking blocks the laser light emission during fly back periods (line flyback and frame flyback), i.e. periods which do not contribute directly to the image creation.

On Becker & Hickl DCS-120 scanning system the beam blacking functionally is switched ON and OFF in the GVD-120 control panel.

On Zeiss LSMs beam blacking is always on. On such systems with 1p excitation by picosecond pulsed lasers the laser is switched ON and OFF periodically. If the laser is OFF there is also no SYNC signal created by the laser because it is not pulsing. Consequently, the SYNC counter on the TCSPC module sometimes “sees” a SYNC signal (during regular imaging) and sometimes it “sees” no SYNC signal (during flyback). As a result of this ON/OFF procedure the display SYNC rate is lower than the actual repetition rate of the laser.

Example: if the laser is set to a repetition rate of 50 MHz the laser will emit 50 million pulses during the ON period and none during the OFF period. The SYNC counter will display a SYNC rate which will be lower than 50 MHz (5e7); in some case the display can be as low as 25 MHz.

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